Struct MolecularSequenceVariant 

pub struct MolecularSequenceVariant {
    pub id: Option<String>,
    pub extension: Option<Vec<Box<Extension>>>,
    pub modifierExtension: Option<Vec<Box<Extension>>>,
    pub start: Option<Box<FHIRInteger>>,
    pub end: Option<Box<FHIRInteger>>,
    pub observedAllele: Option<Box<FHIRString>>,
    pub referenceAllele: Option<Box<FHIRString>>,
    pub cigar: Option<Box<FHIRString>>,
    pub variantPointer: Option<Box<Reference>>,
}

The definition of variant here originates from Sequence ontology (variant_of). This element can represent amino acid or nucleic sequence change(including insertion,deletion,SNP,etc.) It can represent some complex mutation or segment variation with the assist of CIGAR string.

Fields

id: Option<String>

Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.

extension: Option<Vec<Box<Extension>>>

May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

modifierExtension: Option<Vec<Box<Extension>>>

May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element’s descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.

Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).

start: Option<Box<FHIRInteger>>

Start position of the variant on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.

end: Option<Box<FHIRInteger>>

End position of the variant on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.

observedAllele: Option<Box<FHIRString>>

An allele is one of a set of coexisting sequence variants of a gene (SO:0001023). Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.

referenceAllele: Option<Box<FHIRString>>

An allele is one of a set of coexisting sequence variants of a gene (SO:0001023). Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the reference sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.

cigar: Option<Box<FHIRString>>

Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation here.

variantPointer: Option<Box<Reference>>

A pointer to an Observation containing variant information.

Trait Implementations

impl Clone for MolecularSequenceVariant

fn clone(&self) -> MolecularSequenceVariant

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for MolecularSequenceVariant

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for MolecularSequenceVariant

fn default() -> MolecularSequenceVariant

Returns the “default value” for a type.

impl FHIRJSONDeserializer for MolecularSequenceVariant

fn from_json_str(s: &str) -> Result<Self, DeserializeError>

fn from_serde_value( obj: &Value, context: Context<'_>, ) -> Result<Self, DeserializeError>

impl FHIRJSONSerializer for MolecularSequenceVariant

fn serialize_value( &self, writer: &mut dyn Write, ) -> Result<bool, SerializeError>

fn serialize_extension( &self, writer: &mut dyn Write, ) -> Result<bool, SerializeError>

fn serialize_field( &self, field: &str, writer: &mut dyn Write, ) -> Result<bool, SerializeError>

fn is_fp_primitive(&self) -> bool

impl MetaValue for MolecularSequenceVariant

fn fields(&self) -> Vec<&'static str>

fn get_field<'a>(&'a self, field: &str) -> Option<&'a dyn MetaValue>

fn get_field_mut<'a>(&'a mut self, field: &str) -> Option<&'a mut dyn MetaValue>

fn get_index_mut<'a>( &'a mut self, index: usize, ) -> Option<&'a mut dyn MetaValue>

fn get_index<'a>(&'a self, _index: usize) -> Option<&'a dyn MetaValue>

fn typename(&self) -> &'static str

fn as_any(&self) -> &dyn Any

fn flatten(&self) -> Vec<&dyn MetaValue>